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Collection  15 August 2018

Top 10 in Biochemistry and Molecular Biology

Explore our most highly accessed biochemistry and molecular biology articles in the first quarter of 2018. Featuring authors from around the World, these papers highlight valuable research within biochemistry and molecular biology from an international community.

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Pharmacokinetics of soy-derived lysophosphatidylcholine compared with that of glycerophosphocholine: a randomized controlled trial

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Ryohei Tanaka-Kanegae, Hiroyuki Kimura, Koichiro Hamada, Pharmacokinetics of soy-derived lysophosphatidylcholine compared with that of glycerophosphocholine: a randomized controlled trial, Bioscience, Biotechnology, and Biochemistry , Volume 88, Issue 6, June 2024, Pages 648–655, https://doi.org/10.1093/bbb/zbae031

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Lysophosphatidylcholine (LPC) is present in various foods and contains a choline moiety such as in glycerophosphocholine (GPC). However, the potential of LPC as a choline source remains unclear. This study investigated the single-dose pharmacokinetics of 480 mg soy-derived LPC in 12 healthy men compared with that of either soy oil with the same lipid amount (placebo) or GPC with the same choline amount. Both LPC and GPC supplementation increased plasma choline, serum phospholipid, and serum triglyceride concentrations, but neither of them significantly elevated plasma trimethylamine N -oxide concentration. In addition, although the intake of LPC slightly increased plasma LPC16:0, LPC18:2, and total LPC concentrations, their concentrations remained within physiological ranges. No adverse events were attributed to the LPC supplementation. To the best of our knowledge, this study is the first to compare LPC and GPC pharmacokinetics in humans and shows that LPC can be a source of choline.

Pharmacokinetics of lysophosphatidylcholine was evaluated and compared with that of placebo (triglyceride) and glycerophosphocholine in a randomized trial.

Pharmacokinetics of lysophosphatidylcholine was evaluated and compared with that of placebo (triglyceride) and glycerophosphocholine in a randomized trial.

Choline (Ch) is an essential nutrient and important for the structural integrity of cell membranes, methyl metabolism, cholinergic neurotransmission, transmembrane signaling, and lipid and cholesterol transport and metabolism. Although the adequate intake values for Ch were defined by the Food and Nutrition Board of the USA (Institute of Medicine 1998 ), the amounts of Ch consumed by most Americans are still below these values (Wallace et al.   2018 ). Because Ch is found predominantly in animal-derived foods, vegetarians and vegans possibly have a greater risk for inadequacy. Therefore, finding and developing new Ch sources, particularly from plants, are practical.

Lysophosphatidylcholine (LPC) is a lysophospholipid widely found in living organisms and food (Weihrauch and Son 1983 ; Tan et al.   2020 ). Although it contains a Ch moiety, LPC has gained less attention as a Ch source and cognitive enhancer candidate than other Ch sources, such as glycerophosphocholine (GPC) and phosphatidylcholine (PC) (Tayebati and Amenta 2013 ; Traini et al.   2020 ). This is because levels of saturated LPC16:0 and LPC18:0 and monounsaturated LPC18:1 above the physiological ranges can cause pro-inflammatory actions and produce reactive oxygen species (ROS) (Tan et al.   2020 ). However, LPC concentrations in the body are tightly regulated by enzymes for LPC production and clearance, including lecithin-cholesterol acyltransferase, lipoprotein-associated phospholipase A2, and LPC acyltransferase (Law et al.   2019 ). We previously showed in vivo that orally supplemented soy-derived LPC, which is commercially available as enzyme-modified lecithin (EML or lysolecithin), restored brain acetylcholine levels without elevating blood LPC16:0, 18:0, and 18:1 levels and exhibited cholinergic activity comparable with that of GPC (Tanaka-Kanegae, Kimura and Hamada 2023 ). Moreover, pharmacokinetic studies of GPC involved humans (Traini, Bramanti and Amenta 2013 ; Böckmann et al.   2023 ), whereas those of LPC were limited to animals (Nilsson 1968 ; Thies et al.   1994 ). Therefore, in the present study, we aimed to investigate the pharmacokinetics of a soy-derived LPC supplement in comparison with that of a GPC supplement in healthy male volunteers. This pharmacokinetic study may serve as a reference for using LPC as a novel Ch source.

The study was approved by the institutional review board of Otsuka Pharmaceutical Co., Ltd. (Tokyo, Japan; approval number 1802, Q115), registered in the UMIN Clinical Trials Registry (registration number UMIN000052385), and conducted at the Saga Nutraceuticals Research Institute of Otsuka Pharmaceutical Co., Ltd. in compliance with the Declaration of Helsinki.

Human volunteers

Twelve healthy adult males were recruited for the study. Participants were included in the study when they had no health conditions preventing them from fulfilling the study requirements, as judged by the principal investigator based on the laboratory screening test. The main exclusion criteria were as follows: Those who had a digestive disorder that could affect the absorption of the supplement, those who were regularly taking oral medicines, those who had blood pressure considerably deviating from the normal range, those who had donated blood and/or participated in another clinical trial within a month of the study commencement, and those who were allergic to soy. Accordingly, 12 eligible men who provided informed consent were enrolled.

Test supplements

Three supplements were prepared:

Placebo: 11 soft capsules containing 3.3 g of soy oil,

LPC: 11 soft capsules containing 3.3 g of soy-derived EML (SLP-PasteLyso), 480 mg of LPC, and 66 mg of a Ch moiety,

GPC: 11 hard capsules containing 162 mg of GPC (LIPOID GPC) and 66 mg of a Ch moiety.

Soy oil, SLP-PasteLyso, and LIPOID GPC were purchased from The Nisshin OilliO Group, Ltd. (Tokyo, Japan), Tsuji Oil Mills Co., Ltd. (Mie, Japan), and H. Holstein Co., Ltd. (Tokyo, Japan), respectively. The capsules were manufactured by Sankyo Co., Ltd. (Shizuoka, Japan).

The placebo supplement contained soy oil with the same amount of lipid as the LPC supplement. SLP-PasteLyso is an EML that was used to assess the cholinergic activity of LPC in vivo (Tanaka-Kanegae, Kimura and Hamada 2023 ). Although EML is used as an emulsifier and is generally recognized as safe ( FDA ), its tolerable limits for consumption remain to be established. In the present study, the dose of SLP-PasteLyso was set at 480 mg from a formulation perspective; this dose was deemed safe, considering that EML can be added to beverages at a concentration of 1% ( w/w ) ( FDA 2014 ). Meanwhile, the GPC dose was determined such that the same amount of Ch would be ingested as that of the EML. However, the formulations (soft/hard capsules) were inconsistent due to differences in their physical properties. The purity of LPC in SLP-PasteLyso was 14.6%, whereas that of GPC in LIPOID GPC was more than 98%. Although EMLs with higher LPC purities are commercially available, SLP-PasteLyso, which contained fat (55% acetone-soluble matter), was selected because the absorption of LPC through the lymphatic pathway is improved when ingested with fat (Nilsson 1968 ; Tanaka-Kanegae, Kimura and Hamada 2023 ). Additionally, a negligible amount of PC is present in SLP-PasteLyso. The fatty acid composition of LPC in SLP-PasteLyso was determined using the method described below and is shown in Table  1 .

Fatty acid composition of LPC in SLP-PasteLyso

Levels of LPC16:0 (palmitoyl), 18:0 (stearoyl), 18:1 (oleoyl), 18:2 (linoleoyl), and 18:3 (linolenoyl) were quantified. The ratio of each species to the total LPC, which is the sum of the concentrations of the five LPC species, is presented. Quantification was performed three times using the same lot, and the average value was used. LPC, lysophosphatidylcholine.

Study design

This was a randomized, open-label, controlled study with a crossover consumption of placebo, LPC, and GPC. More than 6 days were left between different supplementations as a washout period. A previous study (Böckmann et al.   2023 ) investigated the metabolism of deuterium-labelled (D9) Ch supplements including GPC and PC at the dose of 2.7 mg kg −1 D9-Ch equivalent. The study demonstrated that blood D9 Ch concentration returned to 0 µmol L −1 within 24 h for all the supplements. Regarding the amount of Ch, the dose used in the present study (66 mg Ch per head) was lower than that in the previous study and can be ingested in a daily diet. Therefore, we considered a washout period of 6 days was adequate. Those who assessed the outcomes were blinded to the supplement assignment. The participants consumed standard meals for a day prior to the study. After overnight fasting, the participants ingested their assigned supplement immediately after consuming a standard meal (two pouches of jelly, Ch was not detected in this meal and the fatty acid composition is presented in Table S1 ). Blood samples were collected before and at 0.5, 1, 2, 4, 6, and 8 h after supplementation. Tubes coated with sodium heparin were used for plasma collection. At 4 h after blood collection, the participants consumed the same standard meal. The participants were allowed to drink mineral water freely but refrained from smoking until the final blood collection. The blood samples were centrifuged (1200× g , 15 min, 4 °C), and the plasma and serum were preserved at −80 °C until measurement. All adverse events during the study days were reported.

Chemical analysis

Ingested LPC and GPC are partially degraded into Ch and converted to PC before absorption (Nilsson and Duan 2019 ). Therefore, changes in plasma Ch and LPC and serum phospholipid concentrations were measured after supplementation. Moreover, serum triglyceride (TG) levels were quantified as increased blood PC may facilitate lipid export from the liver into the blood (Olthof et al.   2005 ). Furthermore, the levels of plasma trimethylamine N -oxide (TMAO), which is associated with ROS production and atherosclerosis development (Zhu et al.   2022 ), were evaluated.

Plasma Ch levels were measured following a previously reported method (Tanaka-Kanegae and Hamada 2021 ) with minor modifications. Briefly, the plasma was mixed with isopropyl homocholine as an internal standard and delipidated using chloroform. The supernatant was subjected to solid-phase extraction using an Oasis WCX (Waters Corporation, Milford, MA, USA). Extraction was completed by elution with 5% formic acid in 2-propanol–acetonitrile (60:40, v/v ). After drying with N 2 , the analytes were reconstituted in phosphate buffer (pH 4.4) and injected into the high-performance liquid chromatography (HPLC) electrochemical detection system.

LPC species in the plasma and SLP-PasteLyso were measured as previously reported (Tanaka-Kanegae, Kimura and Hamada 2023 ). Briefly, plasma LPC was extracted using the Bligh and Dyer method (Bligh and Dyer 1959 ) after adding LPC19:0 (nonadecanoyl) as an internal standard. The extract was dried under reduced pressure and reconstituted in methanol. After filtration, the analytes were injected into the HPLC system coupled to an evaporative light-scattering detector. The detected areas for the different concentrations of the LPC16:0 (palmitoyl) standards were converted to a logarithmic scale to generate a fitting curve, and the levels of LPC16:0, 18:0 (stearoyl), 18:1 (oleoyl), 18:2 (linoleoyl), and 18:3 (linolenoyl) were quantified. Total LPC levels were calculated as the sum of these five LPC species. Serum phospholipid and TG levels were determined enzymatically (Takayama et al.   1977 ; Tamaoku et al.   1982 ) by SRL, Inc. (Tokyo, Japan). Plasma TMAO levels were quantified as previously described (Kanemitsu et al.   2017 ).

Statistical analyses

For kinetic parameters, the delta C max was determined by adjusting the 0 h value to 0, and the incremental area under the curve (iAUC) until 8 h after supplementation was calculated using the trapezoidal method (Le Floch et al.   1990 ). Data are expressed as the mean ± standard deviation. Statistical analyses were performed using SAS software (version 9.4; SAS Institute Inc., Cary, NC, USA). The effects of the supplement were assessed using a linear mixed-effects model, with the supplement, period, and sequence as fixed factors, and the participants as the random factor. Considering the exploratory nature of the study, correction for multiple testing was not conducted when differences among the supplements were assessed. Differences from the baseline were analyzed using a two-tailed Dunnett's post-hoc test after analysis of variance for randomized block designs. Differences in the frequency of adverse events between placebo and LPC groups were analyzed using Fisher exact probability test (two-sided). Differences were considered statistically significant at p  < 0.05.

All 12 test participants completed the study. Although some adverse events, such as headache, were reported during the study, the frequency of such events was not statistically different between placebo and LPC groups ( Table S2 ). In addition, no abnormal changes in laboratory test results were observed after the study. Hence, no adverse events were attributed to LPC supplementation. The plasma Ch concentrations of all the participants are shown in Table S3 . The initial Ch levels of participant ID 12 were considerably above the normal range (7.0-9.3 µmol L −1 , Holm et al.   2003 ) and the levels constantly decreased until 1 h after supplementation, regardless of the content. As a disturbance in Ch metabolism was suspected, that participant was excluded from subsequent analyses. The demographic data of the study participants excluding ID 12 are presented in Table  2 , and the data including ID 12 are presented in Table S4 .

Demographics of the study participants included in analyses

Numbers in brackets indicate the ranges. One participant was excluded from analyses as a disturbance in Ch metabolism was suspected.

Changes in the plasma concentrations, delta C max , and iAUC of Ch are shown in Table  3 (individual data are shown in Table S3 ). A significant supplement effect ( p  = 0.036) on the Ch concentrations was observed. Specifically, the Ch concentrations were significantly higher in the LPC and GPC groups than in the placebo group at 2 and 4 h after supplementation ( p  = 0.0044 and 0.0027 for LPC, respectively; p  = 0.0022 and 0.0005 for GPC, respectively). However, no significant difference in plasma Ch concentrations was found between the LPC and GPC groups at any time point. Additionally, GPC intake significantly increased plasma Ch levels at 4 h compared with the baseline ( p  = 0.017). Moreover, significant differences in the delta C max of Ch were observed between the LPC and placebo groups ( p  = 0.030) and between the GPC and placebo groups ( p  = 0.0085). Furthermore, the iAUC of Ch concentration was significantly higher in the LPC and GPC groups than in the placebo group ( p  = 0.0098 and 0.0003 for LPC and GPC, respectively).

Concentrations, delta C max , and iAUC of plasma Ch

Plasma Ch concentration was measured until 8 h after supplementation. Data are presented as the mean ± SD ( n  = 11). Different letters indicate statistically significant differences between the supplements ( p  < 0.05). * p  < 0.05 vs. 0 h. iAUC, incremental area under the curve; Ch, choline; GPC, glycerophosphocholine.

Changes in the plasma concentrations, delta C max , and iAUC of the LPC species are shown in Table  4 (individual data are shown in Table S5 ). The concentration of LPC18:3 was below the determination limit. No significant supplement effect was observed on any of the pharmacokinetic parameters of the LPC species. However, time effects were observed on some of the LPC species. Specifically, significant increases were observed for the LPC16:0 concentration at 6 h after LPC supplementation ( p  = 0.017), LPC18:2 concentration at 6 and 8 h after placebo supplementation ( p  = 0.0001 and 0.049, respectively) and at 6 h after LPC supplementation ( p  = 0.0029), and the total LPC concentration at 6 h after LPC supplementation ( p  = 0.0062).

Concentrations, delta C max , and iAUC of plasma LPC species

Concentrations of plasma LPC were measured until 8 h after supplementation. LPC18:3 was below the determination limit. Data are presented as the mean ± SD ( n  = 11). * p  < 0.05, ** p  < 0.01 vs. 0 h.

Changes in the serum concentrations, delta C max , and iAUC of phospholipids are shown in Table  5 (individual data are shown in Table S6 ). No significant supplement effect was observed on any of the pharmacokinetic parameters. However, serum phospholipid levels significantly increased in the LPC and GPC groups ( p  = 0.0019 for LPC at 8 h and p  < 0.0001 for GPC at 6 and 8 h).

Concentrations, delta C max , and iAUC of serum phospholipids

Serum phospholipid concentration was measured until 8 h after supplementation. Data are presented as the mean ± SD ( n  = 11). ** p  < 0.01 vs. 0 h.

Changes in the serum concentrations, delta C max , and iAUC of TG are shown in Table  6 (individual data are shown in Table S7 ). A significant supplement effect on the TG concentrations ( p  = 0.0085) was observed. Specifically, the TG concentrations were significantly higher in the LPC and GPC groups than in the placebo group at 6 and 8 h after supplementation ( p  = 0.023 and < 0.0001 for LPC, respectively; p  = 0.041 and 0.0013 for GPC, respectively). However, no significant difference in serum TG concentrations was found between the LPC and GPC groups at any time point. Additionally, significant increases in TG concentration were observed at 4 h in the placebo group ( p  = 0.021); at 2, 4, 6, and 8 h in the LPC group ( p  = 0.022, 0.0007, 0.0014, and 0.0067, respectively); and at 4, 6, and 8 h in the GPC group ( p  = 0.0033, 0.0002, and 0.031, respectively). Moreover, the delta C max of TG was significantly higher in the LPC group than in the placebo and GPC groups ( p  = 0.014 vs. placebo and 0.036 vs. GPC). The iAUC of TG concentration was higher in the LPC group than in the other two groups, but the supplement effect assessed by the linear mixed-effects model was not significant ( p  = 0.097).

Concentrations, delta C max , and iAUC of serum TG

Serum TG concentration was measured until 8 h after supplementation. Data are presented as the mean ± SD ( n  = 11). Different letters indicate statistically significant differences between the supplements ( p  < 0.05). * p  < 0.05, ** p  < 0.01 vs. 0 h. TG, triglyceride.

Changes in the plasma TMAO concentrations are shown in Table  7 (individual data are shown in Table S8 ). No significant supplement or time effect was observed in the plasma TMAO concentrations.

Changes in plasma TMAO concentration

Plasma TMAO concentration was measured until 8 h after supplementation. Data are presented as the mean ± SD ( n  = 11). TMAO, trimethylamine N -oxide.

Only males were enrolled in this study as estrogen affects Ch metabolism (Fischer et al.   2010 ). If the supplement doses in the present trial were considered as the amount of Ch (66 mg), they would be lower than those used in previous trials (Kawamura et al.   2012 ; Böckmann et al.   2022 ; Im et al.   2022 ). Therefore, the delta C max and iAUC were calculated to detect the pharmacokinetic changes after supplementation (Judy 2022 ; Le Floch et al.   1990 ; Tobin, Kiens and Galbo 2008 ). Our results demonstrated that the supplementation of LPC increased plasma Ch concentrations similar to that of GPC, and the average peaks were observed at 4 h after both LPC and GPC supplementation. However, previous studies investigating GPC blood kinetics reported varying but faster peak times for blood Ch concentration. Specifically, Kawamura et al. ( 2012 ) reported the peak at 1 h after 1000 mg GPC intake, Böckmann et al. ( 2022 ) after 2 h (1358 mg GPC), and Im et al. ( 2022 ) after 3 h (1200 mg GPC). Of note, this inconsistency is well reflected by significant inter-personal differences in the blood Ch response observed in the present ( Table S3 ) and previous studies (Böckmann et al.   2022 ). Additionally, blood was not collected 3 h after supplementation in our study, when the peak Ch concentration following GPC consumption may be observed. An animal study supports the possibility that the administration of varying doses of Ch precursors result in different peak times for blood Ch concentration (López-Coviella et al.   1995 ). This could be explained by different ratios of chyloportal partition among individuals, by which degraded Ch is absorbed through portal vein, whereas when Ch is converted to PC in the intestine, it is absorbed through lymphatic vessel. Differences in various enzyme activities related to Ch metabolism in the liver probably add to the individual variability in blood Ch response (Li and Vance 2008 ; Nilsson and Duan 2019 ). The results of the present study did not show a clear tendency that the peak blood Ch concentration after LPC supplementation occurs later than that after GPC supplementation. Future studies are warranted to investigate whether the absorption rates of GPC and LPC are similar.

The SLP-PasteLyso used for LPC ingestion consisted mainly of LPC16:0, 18:0, 18:1, 18:2, and 18:3 (Table  1 ). Therefore, the measurement of these five LPC species in the plasma was prioritized, and the sum of the concentrations was calculated as the total LPC concentration. Plasma LPC16:0, 18:2, and total LPC concentrations increased 6 h after LPC supplementation. However, the increases observed were slight, and plasma concentrations did not exceed their respective physiological ranges (Semba 2020 ; Tan et al.   2020 ). Moreover, a similar increase in plasma LPC18:2 concentration was observed after placebo supplementation, and no significant differences in the delta C max or iAUC of any LPC species were found between the LPC and placebo groups. A previous study showed that the intake of corn oil increased plasma LPC18:2 concentrations (Del Bas et al.   2016 ). Given that corn oil is similar to soy oil in being rich in linoleic acid (18:2), the fatty acid that constituted the ingested oil was possibly assimilated and reused as LPC. In contrast, the intake of GPC, which does not contain fatty acids, did not increase the plasma concentration of any LPC species. Low plasma LPC16:0 levels have been associated with insulin resistance and type 2 diabetes development (Takahashi et al.   2015 ; Zhong et al.   2022 ), while low plasma LPC18:2 concentration is a marker of type 2 diabetes, obesity, coronary artery disease, memory impairment, and a decline in gait speed (Mapstone et al.   2014 ; Gonzalez-Freire et al.   2019 ; Bellot et al.   2023 ). Considering the results of the present and previous studies, we do not consider the slight and temporal increases in LPC16:0 and 18:2 concentrations to be detrimental. However, whether supplementation with these LPC species can counteract the above-mentioned negative outcomes remains unclear. To examine this possibility, future studies should focus on the correlation between the dietary intake of LPC and blood LPC concentrations and changes in the activity of enzymes associated with LPC metabolism and the negative outcomes related to low LPC concentrations.

Supplementation with LPC or GPC elevated serum phospholipid concentrations to a similar extent. This finding is consistent with the notion that ingested LPC and GPC are absorbed into enterocytes as LPC or Ch and partially converted to PC via the cytidine diphosphate-Ch pathway and then enter the circulation (Nilsson and Duan 2019 ). Interestingly, these supplements increased the serum TG levels more than the placebo at certain time points. This may be because PC was used to produce very-low-density lipoprotein (VLDL) particles, which eventually enhanced the transportation of TG pooled in hepatic and intestinal cells into the circulation. Previous studies showed that PC is required for VLDL secretion by the small intestine as well as the liver (Tso et al.   1984 ; Yao and Vance 1988 ; Ko et al.   2020 ) and that a 2-week supplementation with PC slightly increased blood TG levels (Olthof et al.   2005 ). Moreover, the delta C max was higher in the LPC group than in the GPC group. This result indicated that the ingested LPC was partially degraded into GPC and fatty acid (Nilsson and Duan 2019 ), and the liberated fatty acid was utilized to synthesize TG, whereas the same phenomenon did not occur for the ingested GPC.

The metabolism of Ch-containing compounds can generate TMAO, and PC produces less TMAO than GPC given the same amount of Ch (Böckmann et al.   2022 ; Böckmann et al.   2023 ). Thus, we hypothesized that the same phenomenon could be observed for LPC as part of the ingested LPC follows the metabolic pathway of PC (Nilsson and Duan 2019 ), and this hypothesis is well supported by a preceding animal study (Duan et al.   2021 ). Although the plasma TMAO concentrations after supplementation were measured, no significant changes were observed. We confirmed that the coefficient values of our analysis system for intra-/inter-day variation in plasma TMAO were less than 7% ( Table S9 ). However, we found no significant increase in TMAO concentrations, possibly because of the considerable differences among individuals, relatively low supplementation doses, and limited sample size. TMAO production in the body is affected by age, intestinal microflora, and other factors; moreover, the previously reported baseline concentrations of TMAO differed across studies (Gatarek and Kaluzna-Czaplinska 2021 ). Therefore, higher doses of LPC and a larger sample size should be applied in future studies to investigate the dose dependency of LPC on blood TMAO concentrations and compare the effects of LPC and GPC supplementation on blood TMAO concentrations.

Regarding the limitation of this study, we did not impose an inclusion criterion on participant's body weight. Either setting such a criterion or adjusting the supplementation dose by body weight may have yielded less inter-personal variability in blood concentrations of the measured compounds. Another limitation was that we did not measure the levels of inflammatory markers. In addition, lysophosphatidic acid that is metabolized by autotaxin from LPC, has been associated with cancer and other inflammatory diseases (Law et al.   2019 ). Therefore, changes in inflammatory status and lysophosphatidic acid concentrations after LPC supplementation should be investigated to ensure the safety of LPC supplementation.

To the best of our knowledge, this study is the first to investigate the pharmacokinetics of LPC and compare it with that of GPC in humans. These results demonstrate that LPC can function as a Ch source, similar to GPC. Given the clinical efficacy of GPC (Traini, Bramanti and Amenta 2013 ; Traini et al.   2020 ), LPC supplementation may also enhance human cognitive function. Its usability and superiority over other Ch sources require further investigation.

The data underlying this article are available in Supplementary Tables.

R.T.-K.: conceptualization, data curation, formal analysis, investigation, methodology, validation, and writing of the original draft. H.K.: LPC measurement and validation. K.H.: project administration, writing—review and editing.

This study was conducted using resources provided by Otsuka Pharmaceutical Co., Ltd. The funder provided support in the form of salaries to the authors but did not have any additional role in the study design, data collection and analysis, decision to publish, or preparation of the manuscript.

No potential conflict of interest was reported by the authors.

R.T.-K. thanks his colleagues and Dr. K.H. for their helpful discussions. The authors are grateful to Dr. O.M. and the nurses who cooperated for the study and T.H. for providing the TMAO measuring service.

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In Silico Repurposing of a Novel Inhibitor (drug) of EGFR and VEGFR-2 Kinases of Cancer by Pharmacokinetics, Toxicity, Molecular Docking, and Molecular Dynamics Simulation

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  • Published: 24 May 2024

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biochemistry and biotechnology research papers

  • Mona H. Ibraheim 1 ,
  • Ibrahim Maher   ORCID: orcid.org/0000-0002-9240-3872 1 &
  • Ibrahim Khater 2  

Vascular endothelial growth factor is an angiogenic that promotes the development and metastasis of tumors (VEGF). The epidermal growth factor receptor, or EGFR, controls the division, growth, and death of cells via several signaling pathways. It has been found that most of the tyrosine kinase EGFR/VEGFR-2 inhibited by drugs that the FDA has approved are so far. The main objective of the present study was to identify an efficacious and selective dual inhibitor of VEGFR-2/EGFR for the treatment of cancer. Out of the 400 ligands tested against the kinases, 12 compounds demonstrated the best docking scores through molecular docking for the two kinases. Of these, only compound SCHEMBL2435814 inhibited the kinases with the highest score values when compared to a reference, vandetanib, as a dual inhibitor of EGFR/VEGFR-2 kinases through interaction with the identified active sites pocket. Following drug-likeness score toxicity and pharmacokinetic testing, the two compounds, SCHEMBL2435814 and vandetanib, were analyzed to determine how the two kinases interacted with each other. The results of calculations of π-cation interactions, hydrogen bonds, and hydrophobic interactions demonstrated a strong interaction between the two kinases and SCHEMBL2435814. Eventually, molecular dynamic modeling was used to assess the stability of complexes. This demonstrated many characteristics, including RMSF, RMSD, SASA, RG, and H-bond analysis, which demonstrated that SCHEMBL2435814 with the two kinases was more stable than vandetanib over a 100ns simulation period. By suppressing EGFR/VEGFR-2, chemical SCHEMBL2435814 may be able to postpone the signaling pathway of proteins that are essential to the advancement of cancer.

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Ibraheim, M.H., Maher, I. & Khater, I. In Silico Repurposing of a Novel Inhibitor (drug) of EGFR and VEGFR-2 Kinases of Cancer by Pharmacokinetics, Toxicity, Molecular Docking, and Molecular Dynamics Simulation. Appl Biochem Biotechnol (2024). https://doi.org/10.1007/s12010-024-04958-8

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